We have contributed two article’s to this year’s Trillium Pathology issue. Here are the abstracts, with links to the full articles: V. Bruns, Programming-free Image-Analysis Workflows for IHC, IF and Spatial...
Tag - MIKAIA®
Volker Bruns
MIKAIA Plugin API: “Plug in your own AI”
This app note describes the MIKAIA Plugin API. It can be used by bioinformaticians to plug in their own AI script, e.g., written in Python or any other language, into MIKAIA® and this way put their AI into the hands of...
MIKAIA: Build H&E Analysis using Multiple AIs
MIKAIA® is specifically designed for researchers in academia, CROs, biotech, pharma. One of the challenges is that researchers by design do unique things. For this reason, MIKAIA® apps do not represent individual side...
MIKAIA: Differential IHC Cell Detection by ROI
This article is based on a our presentation “IHC Cell Analysis — More than just Cell Counting: A proposed Workflow” at the European Conference for Digital Pathology (ECDP) 2024 in Vilnius, Lithuania...
List of Commercial Spatial Biology Instruments, Assays & Softwares
Spatial Biology is a big hype right now and a rapidly growing discipline, especially spatial proteomics and spatial transcriptomics. It is the intersection of anatomical pathology where the morphology of tissue is...
WSI and Annotation File Format I/O Support in MIKAIA
MIKAIA® supports various I/O formats, find out which ones. Importable whole-slide-image file formats Format / VendorCommentsOME-TIFFBrightfield and fluorescence. Z-stacks and timelines supported (mutually-exclusive). No...
MIKAIA: Quantifying Perineural Invasion in Duplex IHC
This MIKAIA® App Note shows how to quantify tumor in proximity to nerve fibers (perineural invasion) in a IHC duplex-stained tissue section, where nerves appear red (antigen: S100) and tumor brown (antigen:...
Ultimate Guide: 10 Things to Know about the Transformational Impact of Digital Pathology
Digital Pathology is a new data source to transform medicine Medscape – Oct 15, 2014. This was the hook line of a 2014 article in Medscape we stumbled across the other day. Ten years later...
Grit Nickel
Annotation Concepts in MIKAIA for Whole-Slide-Images
The first step to creating a supervised Digital Pathology AI is to annotate whole-slide-images. MIKAIA® uses various annotation concepts. Working with MIKAIA® is easier when these annotation concepts are known and...
MIKAIA® University
MIKAIA® University is the central MIKAIA® learning portal. Here you can find various App Notes and Video Tutorials that describe typical MICAIA® workflows either from a technical or medical perspective. As we are...
