When designing a new immunohistochemistry (IHC) assay, a quantitative assessment of how it “responds” in different tissues of various organs is insightful and helps optimizing the assay in an objective way...
Tag - MIKAIA® App Note
MIKAIA University App Notes are blog articles that provide a detailed, step-by-step demonstration of specific MIKAIA® apps or medical use cases. They illustrate how MIKAIA® can be used to make discoveries or automate quantitative analysis in Digital Pathology & Spatial Biology.
Volker Bruns
MIKAIA Spatial Clustering App
Tumor cells dynamically interact with their microenvironment to stimulate cancer development, progression, and metastasis. To understand the biology of the tumor-immune interactions, it is essential to identify tumoral...
Nathalie Falk
MIKAIA-Analysis of Human Pancreas 4plex Scanned with NanoString GeoMx DSP
In this MIKAIA® University application note, we guide you through the analysis of a common use case, coexpression of marker combinations in islets of Langerhans and surrounding tissue in a pancreas 4plex imaged with...
MIKAIA-Analysis of Human Tonsil 15plex Imaged with Akoya PhenoCycler-Fusion
In this MIKAIA® University application note, we guide you through the analysis of a common use case, coexpression of marker combinations in lymphoid follicles and interfollicular tissue in a tonsil 15plex imaged with...
MIKAIA FL Cell Analysis App
MIKAIA® University Application Note: Analyzing multiplexed immuno fluorescent (mIF) slides MIKAIA® has good support for viewing, annotating and analyzing multi-plexed (aka high-plex, aka hyper-plex) whole-slide images...
MIKAIA AI Authoring App
MIKAIA® University Application Note: Interactively training an AI with the AI Authoring App — programming-free and from just a few example annotations By design, researchers often have unique questions that they...
MIKAIA IHC Cell Detection App
MIKAIA® University Application Note: Immune cell infiltration in tumor micro environment (TME) List of other articles on analysis of IHC stains: new (Oct. 2025): IHC Cell Detection App explained (23min video tutorial...
MIKAIA Tile Export App
You want to develop your own digital pathology AI? The following MIKAIA® University application note explains how to create an AI training dataset using the MIKAIA® Tile Export App. The first step is to create a dataset...
