Life Science Spatial Biology

Analyzing Singular Genomics G4X™ Multi-Omics Datasets with MIKAIA

MIKAIA® studio v3.1 includes native support for viewing and analyzing multi-omics datasets created with Singular Genomics’ G4X™ instrument. G4X features 500plex transcriptomics, 18plex proteomics and same-slide morphology via fluorescent...

Volker Bruns

Add comment

Life Science Spatial Biology

Cell Typing and Neighborhood Analysis of mIF 20plex Tonsil Tissue Using MGI VisiOmics and MIKAIA studio

The collaboration aims to show how researchers can use VisiOmics image data within MIKAIA® workflows for cell segmentation, phenotyping, and spatial analysis. This work supports greater flexibility in downstream analysis, helping laboratories...

Volker Bruns

Add comment

Life Science MIKAIA University Spatial Biology

Xenium Analysis with the MIKAIA Cell x Gene App

The MIKAIA® Cell x Gene App can be used to analyze FISH (or similar, e.g., RNAscope), CISH, or spatial transcriptomics scans, including Xenium by 10x Genomics. For Xenium data in particular, this app is the right choice, supporting three types of...

Volker Bruns

Add comment

Category - Life Science

Common category to topics from Digital Pathology, Computational Pathology, Spatial Biology as well as applications and technologies left and right.

Digital Pathology

Spatial Biology

screenshot of the IHC Cell Detection App video tutorial

Digital Pathology Life Science MIKAIA University

MIKAIA’s Universal IHC Cell AI App explained

The Universal IHC Cell AI App features a universal subcellular IHC cell AI that is compatible with a wide range of markers, tissues, and cell types. Our 23-minute video tutorial guides MIKAIA® step by step through the...

Volker Bruns

October 7, 2025

example of one of the before and after pictures in MIKAIA's mIF Cell Segmentation gallery

Life Science MIKAIA University Spatial Biology

MIKAIA mIF Cell Segmentation AI Gallery

This gallery highlights MIKAIA's mIF Cell Segmentation in the FL Cell Analysis App, featuring various examples and an overview of the AI's three segmentation modes and various cell typing options.

Volker Bruns

September 28, 2025

Digital Pathology Life Science MIKAIA University Spatial Biology

MIKAIA First Steps

New to MIKAIA®? This blog post is here to help you get started on your first steps.

Volker Bruns

August 7, 2025

Digital Pathology Life Science MIKAIA University

MIKAIA IHC Cell Quantification AI Gallery

This gallery illustrates for a range of different tissue types and IHC markers the cell analysis quality of MIKAIA‘s IHC Cell Detection App. The app first unmixes the stain components, then uses an AI to delineate...

Volker Bruns

July 15, 2025

In 2022/2023, Digital Pathology AIs took off like the metaphorical balloon.

Digital Pathology Life Science

Digital Pathology AI Companies — List of Commercial AIs (CE-IVDR, FDA, RUO)

NEW: This article and the downloadable list was updated on July 15th 2025 2022 – 2024 have been breakthrough years for AI in digital pathology. Many new startups, backed by lots of venture capital, as well as...

Volker Bruns

July 15, 2025

Screenshot of High-plex analysis conducted with MIKAIA

Life Science Spatial Biology

Conquering High-plex Analysis of Spatial Proteomics Images: Article in Trillium Pathology 2025

In this year’s Trillium Pathology, Volker Bruns (Fraunhofer IIS), Sonja Fritzsche (Max Delbrück Center for Molecular Medicine), and Fabian Coscia (Max Delbrück Center for Molecular Medicine) have contributed an article...

Grit Nickel

June 20, 2025

Life Science MIKAIA University Spatial Biology

Overview of MIKAIA’s Spatial Analysis Apps for Multiplexed Immunofluorescence Slides

A strong suit of MIKAIA® is its wide portfolio of analysis apps for multiplexed immunofluorescence (mIF) / spatial proteomics. It can be used for both low-plex and high-plex panels and is compatbile with image formats...

Volker Bruns

May 22, 2025

Spatial Patterns can be discovered with MIKAIA using the FL Cell analysis app, for example

Digital Pathology Life Science MIKAIA University Spatial Biology

More than AI-based Analysis: Discover Spatial Patterns in your Whole Slide Images with MIKAIA

How can the advanced AI analysis capabilities of MIKAIA® assist researchers and clinicians in analyzing their digital pathology and spatial biology data? This talk provides an overview of MIKAIA’s advanced...

Michaela Benz

May 21, 2025

MIKAIA screenshot of a 47-plex spatial proteomics scan created with a MACSima instrument

Life Science MIKAIA University Spatial Biology

Analyzing MACSima 47-plex mIF with MIKAIA: AI Cell Segmentation + Cell Typing + Cell-cell Connections + Cellular Neighborhoods

This MIKAIA® app note demonstrates how to analyze a 47-plex spatial proteomics scan created with MACSima ™ (by Miltenyi Biotec), utilizing sequential immunofluorescence for the analysis: Instrument: MACSima™ by Miltenyi...

Volker Bruns

April 25, 2025

Digital Pathology Life Science MIKAIA University

High Content Imaging: Analyzing Ex-Vivo Drug Response Assays with MIKAIA

Researchers at the Fraunhofer Institute for Toxicology and Experimental Medicine (ITEM) have developed PEDRA: Platform for Ex-Vivo Drug Response Assays. Up to 100 compounds are tested in parallel on primary patient...

Volker Bruns

April 14, 2025

Analyzing Singular Genomics G4X™ Multi-Omics Datasets with MIKAIA

Cell Typing and Neighborhood Analysis of mIF 20plex Tonsil Tissue Using MGI VisiOmics and MIKAIA studio

Xenium Analysis with the MIKAIA Cell x Gene App

Category - Life Science

MIKAIA’s Universal IHC Cell AI App explained

MIKAIA mIF Cell Segmentation AI Gallery

MIKAIA First Steps

MIKAIA IHC Cell Quantification AI Gallery

Digital Pathology AI Companies — List of Commercial AIs (CE-IVDR, FDA, RUO)

Conquering High-plex Analysis of Spatial Proteomics Images: Article in Trillium Pathology 2025

Overview of MIKAIA’s Spatial Analysis Apps for Multiplexed Immunofluorescence Slides

More than AI-based Analysis: Discover Spatial Patterns in your Whole Slide Images with MIKAIA

Analyzing MACSima 47-plex mIF with MIKAIA: AI Cell Segmentation + Cell Typing + Cell-cell Connections + Cellular Neighborhoods

High Content Imaging: Analyzing Ex-Vivo Drug Response Assays with MIKAIA

Digital Health

Life Science

All Categories

Category - Life Science

Digital Health

Life Science

All Categories

Tags