Installation and Setup V3

Aus CTS2-LE
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Required Software/Server

  • files fuseki-cts2le.zip and solr-cts2le.zip are included in the CTS2-LE release


Fuseki Installation

  • unzip fuseki-cts2le.zip to a directory (denoted by <F1> in the following)
  • unzip apache-jena-fuseki-3.8.0.zip from https://jena.apache.org/download/ (the extracted directory apache-jena-fuseki-3.8.0 is denoted by <F2> in the following)
  • go to directory <F2>
  • run ./fuseki start and ./fuseki stop subsequently (in order to let directory <F2>/run be generated)
  • copy <F1>/cts2le.ttl to <F2>/run/configuration
  • copy <F1>/log4j.properties to <F2>/run
  • start command: ./fuseki start
    Windows Powershell: .\fuseki-server.bat
  • shutdown command: ./fuseki stop
    Windows Powershell: ctrl-c

Solr Installation

  • unzip solr-cts2le.zip to a directory (denoted by <S1> in the following)
  • unzip solr-7.6.0.zip from http://lucene.apache.org/solr/downloads.html (the extracted directory solr-7.6.0 is denoted by <S2> in the following)
  • go to directory <S2>
  • start command: ./bin/solr start -s <S1>
  • shutdown command: ./bin/solr stop -all

WebCts2LE Installation

  • file WebCts2LE-embedded-jetty.zip is included in the CTS2-LE release

General

  • unzip WebCts2LE-embedded-jetty.zip to a directory (denoted by <W> in the following)

Embedded Jetty Variant

  • edit file <W>/CTS2LE_resources/resources-custom/setting.json. The following fragment shows the relevant lines to adapt:
	store: 'fuseki',
	storePath: 'http://localhost:3030/cts2le',
	
	luceneMode: 'remote',
	luceneIndexPath: 'http://localhost:8983/solr/cts2le',

Be sure that

  • store='fuseki' and luceneMode='remote' and host:port of storePath and luceneIndexPath are set to the server endpoints

!!! WebCts2LE does not not run properly if the fuseki or solr endpoint are not running.

  • go to directory <W>
  • start command: ./bin/startup.sh -port <port>
    Windows Powershell: .\bin\startup.bat -port <port>
  • shutdown command: ./bin/shutdown.sh <port>
    Windows Powershell: ctrl-c
  • navigation ui: http://<host>:<port>/WebCts2LE

WebCts2LE Basic Security

The Embedded Jetty Variant supports simple security based on Basic Access Authentication for services that modify the data base (advanced security will not be supported at this architecture level, instead special security components should be placed on top of WebCts2LE). Changing security (see HashLoginService at https://www.eclipse.org/jetty/documentation/9.4.x/configuring-security.html for details):

  • edit <W>/conf/basic-realm.properties. It contains username: password,rolename, e.g. admin: webcts2le-admin,admin. Change username or password if needed. Role name admin should not be changed.
  • run service with basic authentication via option flag: ./bin/startup.sh -port <port> -basic_auth

(Bulk-)Loading of Terminologies

  • file cts2le-3-command-bulk.jar is included in the CTS2-LE release

Standard Terminologies (RDF-ntriples)

  • file ntriples-collection.zip is included in the CTS2-LE release
  • unzip ntriples-collection.zip to a directory (denoted by <N> in the following)
  • unzip cts2le-3-command-bulk.jar to a directory (denoted by <C> in the following)
  • go to directory <C>
  • run java -jar cts2le-3-command-bulk.jar --clear --command fileToStore --format ntriples --path <N> --target cts2le --targetLoc <endpoint>

!!! solr index/sugg update

Custom FHIR Terminologies