CTS2-LE Loading Core Terminologies: Unterschied zwischen den Versionen
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= Activating a Loader = | = Activating a Loader = | ||
This section refers to some notations that were introduced in the [[Installation and Setup V2|Installation and Setup Guide]]). | This section refers to some notations that were introduced in the [[Installation and Setup V2|Installation and Setup Guide]]). | ||
| − | + | <ol> | |
| − | + | <li> Ensure that the server is not running </li> | |
| − | + | <li> Open <code>'''''<H>'''''\CTS2LE_resources\resources-custom\cts2_conf.xml</code> </li> | |
Example cts2_conf.xml file | Example cts2_conf.xml file | ||
<syntaxhighlight lang="xml"> | <syntaxhighlight lang="xml"> | ||
<conf> | <conf> | ||
| − | + | <vocabularies loadAll="false" fresh="false" index="false" sigCheck="false"> | |
| − | + | <vocabulary load="true" friendly-name="Example code system" resourceID="exa"/> | |
| − | + | </vocabularies> | |
</conf> | </conf> | ||
</syntaxhighlight> | </syntaxhighlight> | ||
| − | Adapt the following attributes according to your needs; i.e. fill in '''true''' to enable the described behaviour: | + | |
| + | <li>Adapt the following attributes according to your needs; i.e. fill in '''true''' to enable the described behaviour:</li> | ||
* attributes of the <code><vocabularies></code>-element | * attributes of the <code><vocabularies></code>-element | ||
** '''loadAll''': load all vocabularies stated by means of the child <code><vocabulary></code> elements | ** '''loadAll''': load all vocabularies stated by means of the child <code><vocabulary></code> elements | ||
| Zeile 73: | Zeile 74: | ||
** '''friendly-name''': is the human readable name for a terminology - changing the value of this attribute will not have any effect at all | ** '''friendly-name''': is the human readable name for a terminology - changing the value of this attribute will not have any effect at all | ||
** '''resourceID''': is a system intern identifier for the terminology; <span style="color:red">must not be changed</span> | ** '''resourceID''': is a system intern identifier for the terminology; <span style="color:red">must not be changed</span> | ||
| + | <li> Save the file</li> | ||
| + | <li> Change to directory '''''<H>'''''</li> | ||
| + | <li> - On Windows: Run <code>bin\SuperLoader.bat</code> <br> - On Linux: Run <code>./bin/SuperLoader.sh</code></li> | ||
| + | </ol> | ||
Version vom 18. Oktober 2016, 16:48 Uhr
Overview
CTS2-LE currently provides specific loaders for the below listed terminological resources. Due to the fact that file structures or entire file representations of a code system/value set may change when new versions are published, the usage of a loader is always bound to a specific terminology version. Thus, if a user wishes to import a vocabulary that is not represented through a FHIR value set definition, he or she has to send a request to the contact partner at Fraunhofer FOKUS.
| Terminology | Version, Language | System Intern Identifier | Obtained from, file format |
|---|---|---|---|
| International Classification of Diseases (ICD) | 2010, English | ICD10en-v10 | World Health Organization, ClaML |
| Internationale statistische Klassifikation der Krankheiten und verwandter Gesundheitsprobleme | 2013, German | ICD10de-v13 | DIMDI downloads, ClaML |
| Internationale statistische Klassifikation der Krankheiten und verwandter Gesundheitsprobleme | 2015, German | ICD10de-v15 | DIMDI downloads, ClaML |
| Alphabetisches Verzeichnis zur ICD-10-GM | 2013, German | alphaID-v13 | DIMDI downloads, TXT (CSV) |
| Alphabetisches Verzeichnis zur ICD-10-GM | 2015, German | alphaID-v15 | DIMDI downloads, TXT (CSV) |
| Internationale statistische Klassifikation der Krankheiten und verwandter Gesundheitsprobleme | 2015, German | ICD10de-v15 | DIMDI downloads, ClaML |
| Alphabetisches Verzeichnis zur ICD-10-GM | 2015, German | alphaID-v15 | DIMDI downloads, TXT (CSV) |
| Operationen- und Prozedurenschlüssel | 2013, German | ops13 | DIMDI downloads, ClaML |
| Operationen- und Prozedurenschlüssel | 2015, German | ops15 | DIMDI downloads, ClaML |
| Medical Subject Headings | 2012, English | mesh12 | NIH downloads (U.S. National Library of Medicine), XML |
| Medical Subject Headings | 2014, English + additional German designations | mesh14 | NIH downloads (U.S. National Library of Medicine), XML |
| Medical Subject Headings | 2014, German | mesh14-de | DIMDI downloads, XML |
| HL7-v3- and FHIR- value sets | 2013, English | hl7-fhir | FHIR downloads (Health Level Seven - FHIR V0.12), XML |
| Anatomisch Therapeutisch Chemische Klassifikation mit definierten Tagesdosen (ATC DDD) | 2013, German | ATC_DDD_v13 | WiDO downloads (Wissenschaftliches Institut der AOK), XML |
| Anatomisch Therapeutisch Chemische Klassifikation mit definierten Tagesdosen (ATC DDD) | 2015, German | ATC_DDD_v15 | WiDO downloads (Wissenschaftliches Institut der AOK), XML |
| Unified Code for Units of Measure | 2013, English | ucum | UCUM downloads, TSV |
| Logical Observation Identifiers Names and Codes | 2.44, English | loinc | LOINC downloads (Regenstrief Institute, Inc.), XML |
| SNOMED CT | 2015, English | snomed | IHTSDO (International Health Terminology Standards Development Organisation) |
| PathLex | 2015, English | pathlex | Anatomic Pathology Lexicon, OWL/RDF |
| Bundeslebensmittelschlüssel | 3.02 , German + English | bls | Max Rubner Institut, TXT |
Activating a Loader
This section refers to some notations that were introduced in the Installation and Setup Guide).
- Ensure that the server is not running
- Open
<H>\CTS2LE_resources\resources-custom\cts2_conf.xml
Example cts2_conf.xml file
- Adapt the following attributes according to your needs; i.e. fill in true to enable the described behaviour:
- attributes of the
<vocabularies>-element- loadAll: load all vocabularies stated by means of the child
<vocabulary>elements - fresh: discards the entire store content before loading
- index: build an index based on concept designations
- sigCheck: check the integrated vocabularies for schema conformance
- loadAll: load all vocabularies stated by means of the child
- attribute of individual
<vocabulary>elements- load: load the respective vocabulary
- friendly-name: is the human readable name for a terminology - changing the value of this attribute will not have any effect at all
- resourceID: is a system intern identifier for the terminology; must not be changed
- Save the file
- Change to directory <H>
- - On Windows: Run
bin\SuperLoader.bat
- On Linux: Run./bin/SuperLoader.sh
<conf>
<vocabularies loadAll="false" fresh="false" index="false" sigCheck="false">
<vocabulary load="true" friendly-name="Example code system" resourceID="exa"/>
</vocabularies>
</conf>
